One simple APIfor plasmid QCand validation

PlasmidAgent does QC and construct validation on your plasmid data and returns your results in under 45 seconds.

candidate-002.fastq.gz128.4 MB

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1Upload
2QC checks
3Analysis
4Report

Try PlasmidAgent with a simple one-liner

curl -sS -H "Authorization: Bearer $PLASMIDAGENT_API_KEY" "https://api.plasmidagent.com/v1/analyses?sample_id=candidate-002"

Send your plasmid data.
Get QC and validation back within 45 seconds.

Upload your files with POST /v1/uploads, then use the returned upload IDs. The IDs below are illustrative.

curl -sS -X POST \
  -H "Authorization: Bearer $PLASMIDAGENT_API_KEY" \
  -H "Idempotency-Key: sample-018-run-01" \
  -H "Content-Type: application/json" \
  -d '{
    "sample_id": "sample-018",
    "reads": [{
      "upload_id": "00000000-0000-4000-8000-000000000018",
      "format": "fastq.gz"
    }],
    "reference": {
      "upload_id": "00000000-0000-4000-8000-000000000019",
      "format": "fasta"
    }
  }' \
  https://api.plasmidagent.com/v1/analyses

Validating sample-018

200 · completedreview · 2 flagged

{
  "analysis_id": "ana_7F31",
  "sample_id": "sample-018",
  "verdict": "review",
  "pipeline_version": "2026.08",
  "completed_at": "2026-08-26T09:41:07Z",
  "checks": [
    { "name": "host_gdna", "category": "contamination",
      "status": "flag", "summary": "1.7% detected" },
    { "name": "ampr_feature", "category": "integrity",
      "status": "flag", "summary": "18 bp deletion" }
  ]
}

Inbound files to usable results in under a minute

PlasmidAgent provides one unified API to provide data to and get analysis results back.

Inbound analysis batch

sample-018.fastq.gz1.2 GB

reference.fasta4.2 KB

Data received

PlasmidAgent analysis

Reference identifiedpUC19-ins88
Full-length alignment99.98%
Mean coverage412×
Insert orientationforward
Host gDNA1.7%
ampR feature18 bp deletion

VerdictReview · 2 flagged

JSON webhook

{
  "verdict": "review",
  "checks_passed": 4,
  "checks_flagged": 2
}

HTML report

QC summary with checks, suggestions, and run metadata.

JS Components, JSON or HTML as your customers require

React and JavaScript components

Add upload, progress and results views directly to your product for a simpler integration.

candidate-002

2,686 bp · circular DNA

Review1 finding

Direct JSON

Receive analysis results as structured JSON and use them in your own interface or workflow.

{
  "analysis_id": "ana_7F31",
  "sample_id": "sample-018",
  "verdict": "review",
  "checks": [
    {
      "name": "ampr_feature",
      "status": "flag",
      "summary": "18 bp deletion"
    }
  ]
}

Per-sample pricing that scales with your usage

£0.75 per sample

Get API key